Publications
Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform
Gonatopoulos-Pournatzis T, Aregger M, Brown KR, Farhangmehr S, Braunschweig U, Ward HN, Ha KCH, Weiss A, Bilmann M, Durbic T, Myers Cl, Blencowe BJ, Moffat J. Nature Biotechnology; in press. DOI: 10.1038/s41587-020-0437-z
Datasets
Library Files
human hgRNA optimization library |
mouse hgRNA optimization library |
human exon deletion library |
human dual targeting paralog libary
NovaSeq Raw Read Counts
mouse optimization screen (merged) |
human optimization screen (merged) |
human dual targeting paralog screen |
exon deletion
CHyMErA-Net
A convolutional neural network for Cas12a guide scoring (GitHub)
CHyMErA Scoring
Code for CHyMErA dual-targeting, paralog and exon deletion scoring (GitHub)
Code for CHyMErA exon-deletion scoring (GitHub)